Visualization

2D Allen Reference Atalas (ARA)


The Allen Reference Atlas (ARA) is a high-resolution, annotated digital atlas of the mouse brain, developed by the Allen Institute for Brain Science. It serves as a standardized anatomical framework for neuroanatomical research and gene expression mapping. The atlas provides a comprehensive, hierarchical organization of brain structures, integrating histological and gene expression data.

2D Allen Reference Atalas (ARA) Stereotaxic (Stereotactic)


The 2D Allen Reference Atlas (ARA) Stereotaxic is a specialized version of the Allen Reference Atlas, designed for stereotaxic applications. It enables precise targeting of specific brain regions in experimental neuroscience, particularly for procedures such as injections, electrode placements, and optogenetics.

Neuroviewer


Neuroviewer allows users to seamlessly load and view reconstructed neurons in SWC and ESWC file formats. Whether accessing files directly from GitHub, Google Drive, or locally stored files, users can visualize neuron structures on the fly, making it a convenient tool for exploring and analyzing neural reconstructions effortlessly.

GitHub

MPF Map


Projections patterns of anterograde and retrograde injections of the MPF.

GitHub